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Journal: Microorganisms
Article Title: One-Step Multiplex RT-PCR Method for Detection of Melon Viruses
doi: 10.3390/microorganisms12112337
Figure Lengend Snippet: ( A ). The specificity analysis results of the multiplex RT-PCR detection method. The detection samples corresponding to lanes 1 to 7 only contain WMV, CMV, ZYMV, SqMV, TMV, PRSV, and MYSV, respectively. ( B ). The sensitivity tests of the multiplex RT-PCR detection method. The drop-out experiments were carried out to test the specificity of this multiplex RT-PCR, in which one pair was removed at a time to see whether the rest of the primers had cross-reacted.; lane 1: healthy plant (negative control); lane 2: detection of MYSV; lane 3: detection of PRSV; lane 4: detection of TMV; lane 5: detection of SqMV; lane 6: detection of ZYMV; lane 7: detection of CMV. ( C1 ). Detection results of using different Mg 2+ concentrations in multiplex RT-PCR amplification system. lane 1: at 1.0 mol/L; lane 2: at 1.5 mmol/L; lane 3: at 2.0 mmol/L; lane 4: at 2.5 mmol/L; lane 5: at 3.0 mmol/L; lane 6: at 3.5 mmol/L; lane 7: at 4.0 mmol/L. ( C2 ). Detection results of using different template cDNA volumes in multiplex RT-PCR amplification system. lane 1: at 0.5 μL; lane 2: at 0.75 μL; lane 3: at 1 μL; lane 4: at 1.25 μL; lane 5: at 1.5 μL; lane 6: at 1.75 μL; lane 7: at 2 μL. ( C3 ). Detection results of using different primer amounts in a multiplex RT-PCR amplification system; lane 1: at 2 × 10 −5 μmol, and molar ratios of primers for WMV, CMV, ZYMV, SqMV, TMV, PRSV, and MYSV is 1:1:1:1:1:1:1; lane 2: at 2 × 10 −5 μmol, and molar ratios of primers for WMV, CMV, ZYMV, SqMV, TMV, PRSV, and MYSV is 2:2:2:1:1:1:1; lane 3: at 2 × 10 −5 μmol, and molar ratios of primers for WMV, CMV, ZYMV, SqMV, TMV, PRSV, and MYSV is 10:9:8:8:5:5:3:3; lane 4: at 5 × 10 −5 μmol, and molar ratios of primers for WMV, CMV, ZYMV, SqMV, TMV, PRSV, and MYSV is 1:1:1:1:1:1:1; lane 5: at 5 × 10 −5 μmol, and molar ratios of primers for WMV, CMV, ZYMV, SqMV, TMV, PRSV, and MYSV is 2:2:2:1:1:1:1; lane 6: at 5 × 10 −5 μmol, and molar ratios of primers for WMV, CMV, ZYMV, SqMV, TMV, PRSV, and MYSV is 10:9:8:8:5:5:3:3; lane 7: at 7 × 10 −5 μmol, and molar ratios of primers for WMV, CMV, ZYMV, SqMV, TMV, PRSV, and MYSV is 1:1:1:1:1:1:1. ( C4 ). Detection results of using different dNTP concentrations in multiplex RT-PCR amplification system; lane 1: at 0.2 mmol/L; lane 2: at 0.4 mmol/L; lane 3: at 0.6 mmol/L; lane 4: at 0.8 mmol/L; lane 5: at 1.0 mmol/L; lane 6: at 1.2 mmol/L; lane 7: at 1.4 mmol/L; ( C5 ). Detection results of different amounts of Taq DNA polymerase in multiplex RT-PCR amplification system; lane 1: at 0.25 U; lane 2: at 0.5 U; lane 3: at 0.75 U; lane 4: at 1.0 U; lane 5: at 1.25 U; lane 6: at 1.5 U; lane 7: at 1.75 U. ( C6 ). Detection results of using different annealing temperatures in multiplex RT-PCR method; lane 1: at 50 °C; lane 2: at 51 °C; lane 3: at 52 °C; lane 4: at 53 °C; lane 5: at 54 °C; lane 6: at 55 °C; lane 7: at 56 °C. ( D ). The detection limits of the multiplex RT-PCR assays. The detection limits of this multiplex PCR were conducted by a series of sensitivity tests. The positive clone vector was adjusted to the same initial concentration and diluted serially ten-fold (10 5 to 10 10 copies/μL) to serve as a template in the optimized multiplex PCR. ( D1 ). The detection limits of WMV; 1–6 stand for 10 5 to 10 0 copies/μL. ( D2 ). The detection limits of CMV;1–6 stand for 10 5 to 10 0 copies/μL. ( D3 ). The detection limits of ZYMV; 1–6 stand for 10 5 to 10 0 copies/μL ( D4 ). The detection limits of SqMV; 1–6 stand for 10 5 to 10 0 copies/μL. ( D5 ). The detection limits of TMV; 1–6 stand for 10 5 to 10 0 copies/μL. ( D6 ). The detection limits of PRSV; 1–6 stand for 10 5 to 10 0 copies/μL. ( D7 ). The detection limits of MYSV; 1–6 stand for 10 5 to 10 0 copies/μL. ”–“represents deionized water as control. M: DNA marker (100 bp–2000 bp).
Article Snippet: Using
Techniques: Multiplex Assay, Reverse Transcription Polymerase Chain Reaction, Negative Control, Amplification, Plasmid Preparation, Concentration Assay, Control, Marker